Calculate trajectory of a single gene with no timepoints — plot_gene_traj_single

Function takes in a target gene and will show the genes value for each sample of the matrix.

plot_gene_traj_single_tp(time_object, target_gene, return_data = FALSE)

Arguments

time_object: A timeseries object
target_gene: String indicating the gene
return_data: Boolean indicating of both data and plot should be returned

Value

dataframe with the trajectory data for the requested gene

Examples

TS_object<-create_example_object_for_R()
TS_object <- normalize_timeSeries_with_deseq2(time_object=TS_object)
#> converting counts to integer mode
#Perform conditional differential gene expression analysis
TS_object<-conditional_DE_wrapper(TS_object,vignette_run=TRUE)
aicda_traj_dta<-calculate_gene_traj_data(TS_object,'AICDA')