Calculate trajectory of a single gene — calculate_gene_traj

Function takes in a target gene and will calculate the genes trajectory over the time points within the time object

calculate_gene_traj_data(time_object, target_gene, log_timepoint = FALSE)

Arguments

time_object: A timeseries object
target_gene: String indicating the gene
log_timepoint: Boolean indicating if timepoints should be log transformed

Value

dataframe with the trajectory data for the requested gene

Examples

TS_object<-create_example_object_for_R()
TS_object <- normalize_timeSeries_with_deseq2(time_object=TS_object)
#> converting counts to integer mode
#Perform conditional differential gene expression analysis
TS_object<-conditional_DE_wrapper(TS_object,vignette_run=TRUE)
aicda_traj_dta<-calculate_gene_traj_data(TS_object,'AICDA')