RNAseq counts for AID activation cocktail in a murine timeseries exeriment time series experiment

Source: R/data.R

A data set with RNAseq results for a AID activation cocktail composed of LPS, CD40L, and TGFb-1. Two groups exist: Control (no cocktail) and Treated (with activation cocktail). Initial experiment harvested timepoints at 0, 15min, 30min, 1h, 2h, 3h, 6h, 12h, 24h, and 48h. Only one replicate exists per group per timepoint, so subsequent timepoint of the same groups have been merged as a singular timepoint. For example, timepoints 0 and 15m became timepoint 7.5 minutes.

murine_TS_data

Format

A SummarizedExperiment containing the count matrix as the assay and the sample data as the colData

sample_dta

Dataframe indicating which count files belong to which group, timepoint, and replicate

counts

A matrix of all the count files

Source

<https://bioconductor.org/packages/release/bioc/html/SummarizedExperiment.html>

<https://www.github.com/Ylefol/TimeSeriesAnalysis>