Function which extracts the sample data from the SummarizedExperiment contained within the TimeSerie_Object. The sample data is extracted and returned in a data frame format
exp_sample_data(time_object)The data.frame format of sample data
TS_object <- new('TimeSeries_Object',
group_names=c('IgM','LPS'),group_colors=c("#e31a1c","#1f78b4"),DE_method='DESeq2',
DE_p_filter='padj',DE_p_thresh=0.05,DE_l2fc_thresh=1,
PART_l2fc_thresh=4,sem_sim_org='org.Hs.eg.db',Gpro_org='hsapiens')
TS_object <- TS_load_example_data(TS_object)
exp_sample_data(TS_object)
#> sample group replicate timepoint
#> s-42 s-42 LPS LPS_1 1
#> s-43 s-43 LPS LPS_1 3
#> s-44 s-44 LPS LPS_1 9
#> s-52 s-52 IgM IgM_1 1
#> s-53 s-53 IgM IgM_1 3
#> s-54 s-54 IgM IgM_1 9
#> s-82 s-82 LPS LPS_2 1
#> s-83 s-83 LPS LPS_2 3
#> s-84 s-84 LPS LPS_2 9
#> s-92 s-92 IgM IgM_2 1
#> s-93 s-93 IgM IgM_2 3
#> s-94 s-94 IgM IgM_2 9