Creates tables and plots for genes of interest — create_tables_genes_of_interest

Function which retrieves, processes, and saves information regarding genes which have been labelled as interesting by the user. The function will retrieve the genes differential expression results on both the conditional and temporal axes, then save these results in csv format. One csv file per gene of interest.

The function will also plot and save (as png) the trajectory of each gene

create_tables_genes_of_interest_DE(
  object,
  genes_of_interest,
  save_location,
  DE_type = c("conditional", "temporal"),
  log_tp = FALSE
)

Arguments

object: A TimeSEries object
genes_of_interest: A vector of strings indicating the genes of interest
save_location: The directory in which the results will be saved
DE_type: The differential gene expression axes for which the results will be retrieved
log_tp: Boolean indicating if timepoints should be log10 transformed for the plot

Value

None