RNAseq counts for AID activation cocktail in PBMC time series experiment

Source: R/data.R

A data set with RNAseq results for various AID activation cocktails on a PBMC cell line. Four groups exist: Control (no cocktail), LPS, IgM activation, and TGFb activation. Every group has two replicates per timepoint. Timepoints are days 1, 3, and 9. The data was subsetted to only contain the genes found to be differentially expressed in the PBMC analysis. Subsetting was performed in order to alleviate the vignettes and examples.

PBMC_TS_data

Format

A SummarizedExperiment containing the count matrix as the assay and the sample data as the colData

sample_dta

Dataframe indicating which count files belong to which group, timepoint, and replicate

counts

A matrix of all the count files

Source

<https://bioconductor.org/packages/release/bioc/html/SummarizedExperiment.html>

<https://www.github.com/Ylefol/TimeSeriesAnalysis>