Function which performs differential gene expression for microarray data using limma
This function serves as a wrapper function which calls the functions to create the model matrix, the empirical bayesisan calculation (EB), and the function to convert the EB results to dataframe format for the raw and significant differential expression data
DE_using_limma(
time_object,
group_names,
exp_name,
target_tp = NULL,
do_temporal = FALSE
)A time series object
The group names to be used (either conditional or temporal names)
The name of the expriment that will be used to store the results
The timepoint being targeted in the case of conditional analysis
If the analysis is temporal or conditional
The updated timeseries object