R/data.R
Celegans_TS_data.Rd
A dataset with RNAseq results for a timeseries experiment with three timepoints, at days 1, 3. and 6. The dataset contains two Celegans strain, the BY273 strain (a parkinsons model) and the N2 strain (WT). Each strain is split into two groups, one treated with krill oil and the other is the control. In total the dataset contains four groups: BY273.ctrl, BY273.krill, N2.ctrl, N2.krill
Celegans_TS_data
A SummarizedExperiment containing the count matrix as the assay and the sample data as the colData
Dataframe indicating which count files belong to which group, timepoint, and replicate
A matrix of all the count files
<https://bioconductor.org/packages/release/bioc/html/SummarizedExperiment.html>
<https://www.github.com/Ylefol/TimeSeriesAnalysis>